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<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article" dtd-version="3.0" xml:lang="en">
   <front>
      <journal-meta>
         <journal-id journal-id-type="publisher-id">SJAR</journal-id>
         <journal-title-group>
            <journal-title>Spanish Journal of Agricultural Research</journal-title>
            <abbrev-journal-title>SJAR</abbrev-journal-title>
         </journal-title-group>
         <issn pub-type="epub">2171-9292</issn>
         <publisher>
            <publisher-name>Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)</publisher-name>
         </publisher>
      </journal-meta>
      <article-meta>
         <article-id pub-id-type="publisher-id">12860</article-id>
         <article-id pub-id-type="doi">10.5424/sjar/2018163-12860</article-id>
         <article-categories>
            <subj-group subj-group-type="heading">
               <subject>Research article</subject>
            </subj-group>
         </article-categories>
         <title-group>
            <article-title>
               Detection of
               <italic>Bactrocera oleae</italic>
               (Diptera: Tephritidae) DNA in the gut of
the soil species
               <italic>Pseudoophonus rufipes</italic>
               (Coleoptera: Carabidae)
            </article-title>
         </title-group>
         <contrib-group>
            <contrib contrib-type="author" corresp="yes">
               <name>
                  <surname>Albertini</surname>
                  <given-names>Alice</given-names>
                  <aff>
                     <i>Institute of Life Sciences, Scuola Superiore Sant'Anna, Viale R. Piaggio 34, 56025 Pontedera (PI), Italy</i>
                  </aff>
               </name>
            </contrib>
            <contrib contrib-type="author" corresp="no">
               <name>
                  <surname>Santos</surname>
                  <given-names>Sónia A. P.</given-names>
                  <aff>
                     <i>CIQuiBio, Barreiro School of Technology, Polytechnic Institute of Setúbal, Rua Américo da Silva Marinho, 2839-001 Lavradio, Portugal</i>
                     <i>LEAF, Instituto Superior de Agronomia, Tapada da Ajuda, 1349-017 Lisboa, Portugal.</i>
                  </aff>
               </name>
            </contrib>
            <contrib contrib-type="author" corresp="no">
               <name>
                  <surname>Martins</surname>
                  <given-names>Fátima</given-names>
                  <aff>
                     <i>CIMO/School of Agriculture, Polytechnic Institute of Bragança, Campus de Santa Apolónia, 5300-253 Bragança, Portugal.</i>
                  </aff>
               </name>
            </contrib>
            <contrib contrib-type="author" corresp="no">
               <name>
                  <surname>Pereira</surname>
                  <given-names>José A.</given-names>
                  <aff>
                     <i>CIMO/School of Agriculture, Polytechnic Institute of Bragança, Campus de Santa Apolónia, 5300-253 Bragança, Portugal.</i>
                  </aff>
               </name>
            </contrib>
            <contrib contrib-type="author" corresp="no">
               <name>
                  <surname>Lino-Neto</surname>
                  <given-names>Teresa</given-names>
                  <aff>
                     <i>BioSystems &amp; Integrative Sciences Institute (BioISI), Plant Functional Biology Centre, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal.</i>
                  </aff>
               </name>
            </contrib>
            <contrib contrib-type="author" corresp="no">
               <name>
                  <surname>Petacchi</surname>
                  <given-names>Ruggero</given-names>
                  <aff>
                     <i>Institute of Life Sciences, Scuola Superiore Sant'Anna, Viale R. Piaggio 34, 56025 Pontedera (PI), Italy.</i>
                  </aff>
               </name>
            </contrib>
            <contrib contrib-type="author" corresp="no">
               <name>
                  <surname>Baptista</surname>
                  <given-names>Paula</given-names>
                  <aff>
                     <i>CIMO/School of Agriculture, Polytechnic Institute of Bragança, Campus de Santa Apolónia, 5300-253 Bragança, Portugal.</i>
                  </aff>
               </name>
            </contrib>
         </contrib-group>
         <author-notes>
            <corresp>
               should be addressed to Alice Albertini:
               <email xlink:href="a.albertini@santannapisa.it">a.albertini@santannapisa.it</email>
            </corresp>
         </author-notes>
         <pub-date pub-type="epub">
            <day>01</day>
            <month>09</month>
            <year>2018</year>
         </pub-date>
         <pub-date pub-type="collection">
            <year>2018</year>
         </pub-date>
         <volume>16</volume>
         <issue>3</issue>
         <elocation-id content-type="doi">10.5424/sjar/2018163-12860</elocation-id>
         <history>
            <date date-type="recibido">
               <day>15</day>
               <month>01</month>
               <year>2018</year>
            </date>
            <date date-type="aceptado">
               <day>25</day>
               <month>07</month>
               <year>2018</year>
            </date>
         </history>
         <permissions>
            <copyright-statement>© 2018 INIA</copyright-statement>
            <copyright-year>2018</copyright-year>
            <license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by-nc/3.0/">
               <license-p>This is an open access article distributed under the terms of the Creative Commons Attribution 4.0
International (CC-by 4.0) License.</license-p>
            </license>
         </permissions>
         <abstract id="abstract01">
            <title>Abstract</title>
            <p>
               Pest control service provided by natural enemies of
               <italic>Bactrocera oleae</italic>
               , the key pest of the olive tree, is nowadays recognized as
fundamental.
               <italic>B. oleae</italic>
               has developed resistance to common insecticides, and negative effects both on consumers' health and non-target
species are the major drawbacks of conventional control strategies. Carabid beetles are potential
               <italic>B. oleae</italic>
               pupae predators, but their
predation on field still need to be assessed. We tested adult
               <italic>Pseudoophonus rufipes</italic>
               , a species known to be active in olive orchard when
pest pupae are abundant in the soil, in order to detect
               <italic>B. oleae</italic>
               pupae consumption at different post feeding times for both male and
female carabids. An already existing protocol was used for detecting
               <italic>B. oleae</italic>
               mtDNA sequences of the cytochrome oxidase subunit I
gene in carabids' gut, and its versatility improved.
               <italic>B. oleae</italic>
               mtDNA was detected up to 20 h after pupa ingestion with a high percentage
of success, without significant differences between sexes and pair primers used. Prey DNA extraction was tested from both dissected
and non-dissected carabids, obtaining comparable results. The trapping system used to collect carabids for molecular assays and the
new elements introduced in the protocol represent cost-effective solutions that may be beneficial for future laboratory trials and, mostly,
for the analysis of field-collected predators. Fostering the investigation of soil predators in olive orchard may increase the design of
conservation control strategies against
               <italic>B. oleae</italic>
               .
            </p>
         </abstract>
         <kwd-group>
            <title>Additional key words:</title>
            <kwd>fruit fly;</kwd>
            <kwd>gut content;</kwd>
            <kwd>olive;</kwd>
            <kwd>PCR;</kwd>
            <kwd>biological control;</kwd>
            <kwd>pitfall trap;</kwd>
            <kwd>post feeding time.</kwd>
         </kwd-group>
         <funding-group>
            <funding-statement>Scuola Superiore Sant'Anna, Pisa, Italy (PhD Programme in Agrobiodiversity).</funding-statement>
         </funding-group>
      </article-meta>
      <notes>
         <p>
            <bold>Author's contributions:</bold>
            Conceived and designed the experiments: AA, SAPS, PB. Performed the experiments and analyzed the
data: AA, FM. Contributed reagents/materials/analysis tool: TLN, PB, JAP. Wrote the manuscript: AA. Revised the manuscript: RP,
JAP, SAPS, PB.
         </p>
         <p>
            <bold>Citation</bold>
            Albertini, A.; Santos, S. A. P.; Martins, F.; Pereira, J. A.; Lino-Neto, T.; Petacchi, R.; Baptista, P. (2018). Detection of
Bactrocera oleae (Diptera: Tephritidae) DNA in the gut of the soil species Pseudoophonus rufipes (Coleoptera: Carabidae). Spanish
Journal of Agricultural Research, Volume 16, Issue 3, e1007.
            <ext-link ext-link-type="uri" xlink:href="https://doi.org/10.5424/sjar/2018163-12860">https://doi.org/10.5424/sjar/2018163-12860</ext-link>
         </p>
         <p>
            <bold>Competing interests:</bold>
            The authors have declared that no competing interests exist.
         </p>
      </notes>
   </front>
   <body>
      <sec id="S1">
         <title>Introduction</title>
         <p>
            The olive tree (
            <italic>Olea europaea</italic>
            L.) is one of the main crops in the Mediterranean basin, where the region alone produces 91.2% and consumes 72% of the world's olive oils (International Olive Oil Council,
            <ext-link>http://www.internationaloliveoil.org</ext-link>
            , data updated to 2015/2016 crop year). Losses up to 80% of the oil value and 100% of some table cultivars are caused by the obligate olive key pest, the olive fruit fly
            <italic>Bactrocera oleae</italic>
            (Rossi, 1790) (Diptera: Tephritidae) (
            <xref ref-type="bibr" rid="b11">Daane &amp; Johnson, 2010</xref>
            ;
            <xref ref-type="bibr" rid="b28">
               Malheiro
               <italic>et al.</italic>
               , 2015
            </xref>
            ). The pest indirectly damages the crop by ovipositing inside the fruit and feeding upon the pulp, until reaching the pupal stage. Historically confined to the Mediterranean Basin,
            <italic>B. oleae</italic>
            has spread in almost every country where olive is cultivated for commercial purposes (
            <xref ref-type="bibr" rid="b5">
               Augustinos
               <italic>et al.</italic>
               , 2002
            </xref>
            ). In addition, a predicted 2&#176;C global warming in the Mediterranean Basin between 2030 and 2060 (
            <xref ref-type="bibr" rid="b14">
               Giannakopoulos
               <italic>et al.</italic>
               , 2009
            </xref>
            ) is alerting bioeconomics and producers, as interactions between olive and
            <italic>B. oleae</italic>
            are expected to be enhanced (
            <xref ref-type="bibr" rid="b35">
               Ponti
               <italic>et al.</italic>
               , 2014
            </xref>
            ). For the conservation of olive orchard agroecosystem, economy and cultural heritage, holistic strategies are urgently needed (
            <xref ref-type="bibr" rid="b36">
               Ponti
               <italic>et al.</italic>
               , 2016
            </xref>
            ;
            <xref ref-type="bibr" rid="b29">
               Marchini
               <italic>et al.</italic>
               , 2017
            </xref>
            ).
         </p>
         <p>
            Conventional control strategies against
            <italic>B. oleae</italic>
            have proved to have a negative impact both on consumers' health and non-target species (
            <xref ref-type="bibr" rid="b48">Vickerman &amp; Sunderland, 1977</xref>
            ;
            <xref ref-type="bibr" rid="b4">Amvrazi &amp; Albanis, 2009</xref>
            ), not to mention the development of resistance by the pest to frequently used insecticides (
            <xref ref-type="bibr" rid="b11">Daane &amp; Johnson, 2010</xref>
            ;
            <xref ref-type="bibr" rid="b34">
               Pavlidi
               <italic>et al.</italic>
               , 2018
            </xref>
            ). Initial inroads have been made in understanding the role of resident natural enemies of
            <italic>B. oleae</italic>
            . Indeed, the assessment of pest control ecosystem service would be of utmost importance in the design of environmental-friendly management plans. Literature on conservation biological control of
            <italic>B. oleae</italic>
            has been addressing at the interactions between potential soil predators and pre-imaginal stages of the pest (
            <xref ref-type="bibr" rid="b33">
               Orsini
               <italic>et al.</italic>
               , 2007
            </xref>
            ;
            <xref ref-type="bibr" rid="b39">
               Santos
               <italic>et al.</italic>
               , 2007
            </xref>
            ;
            <xref ref-type="bibr" rid="b13">
               Dinis
               <italic>et al.</italic>
               , 2016
            </xref>
            ). The third instar larvae of the overwintering generation leave the drupe to pupate in the first centimeters of the soil (
            <xref ref-type="bibr" rid="b12">
               Dimou
               <italic>et al.</italic>
               , 2003
            </xref>
            ). Here, they spend several months, being thus exposed to a guild of soil predators and abiotic factors, until they emerge as adults (
            <xref ref-type="bibr" rid="b7">Bateman, 1972</xref>
            ;
            <xref ref-type="bibr" rid="b9">Cavalloro &amp; Delrio, 1975</xref>
            ).
         </p>
         <p>
            DNA-based techniques have been providing valua­ble results in unraveling these interactions between the pest and its natural enemies, mostly when direct obser­va­tion of predation in the field are impractical (
            <xref ref-type="bibr" rid="b16">
               González-Chang
               <italic>et al.</italic>
               , 2016
            </xref>
            ). Polymerase chain reaction (PCR)-based analysis of unique prey DNA sequences has proven to be a highly sensitive, specific and cost-effective tool for detecting prey's remains in the predator's gut (
            <xref ref-type="bibr" rid="b45">Symondson, 2002</xref>
            ). Several factors affect the probability of detecting prey DNA sequences, such as the identity and physiology of the predator, the collection method, the preservation of the specimens and the choice of the molecular markers, and some methodological issues still need to be optimized (
            <xref ref-type="bibr" rid="b21">Juen &amp; Traugott, 2006</xref>
            ;
            <xref ref-type="bibr" rid="b51">Weber &amp; Lundgren, 2009</xref>
            ). Since the likelihood of detecting the prey target sequences decreases with post feeding time, one of the main ecological issues is inspecting which is the maximum time that prey consumption can be detected, in order not to underestimate predation (
            <xref ref-type="bibr" rid="b17">
               Greenstone
               <italic>et al.</italic>
               , 2007
            </xref>
            ). While in laboratory trials the post feeding time can be controlled, this issue is particularly relevant in field analyses, where predators are collected after an unknown post feeding time. In addition, predator identity (
            <italic>e.g.</italic>
            taxonomy identity and sex) may affect post feeding prey DNA detection intervals (
            <xref ref-type="bibr" rid="b52">
               Zaidi
               <italic>et al.</italic>
               , 1999
            </xref>
            ;
            <xref ref-type="bibr" rid="b42">
               Sheppard
               <italic>et al.</italic>
               , 2005
            </xref>
            ). For a given specific prey, calibratory feeding trials are therefore required to assess the robustness and versatility of the PCR-based diagnostic assay for a broad range of predators (
            <xref ref-type="bibr" rid="b22">
               King
               <italic>et al.</italic>
               , 2008
            </xref>
            ;
            <xref ref-type="bibr" rid="b1">
               Aebi
               <italic>et al.</italic>
               , 2011
            </xref>
            ).
         </p>
         <p>
            Despite the accumulating evidence that carabid beetles (Coleoptera: Carabidae) are a dominant compo­nent in the predatory fauna of olive orchard (
            <italic>e.g.</italic>
            ,
            <xref ref-type="bibr" rid="b26">Lasinio &amp; Zapparoli, 1993</xref>
            ;
            <xref ref-type="bibr" rid="b15">Gonçalves &amp; Pereira, 2012</xref>
            ), a better understanding of the chance to molecularly detect the olive pest in adult carabid's gut is required. Recently,
            <xref ref-type="bibr" rid="b38">
               Rejili
               <italic>et al.</italic>
               (2016)
            </xref>
            designed
            <italic>B. oleae</italic>
            specific primers based on mtDNA sequences of
            <italic>cytochrome oxidase subunit I</italic>
            (
            <italic>COI</italic>
            ) gene to successfully detect the prey consumption by the carabid
            <italic>Pterostichus globosus</italic>
            (Fabricius, 1792) up to 16 h after prey's ingestion, in laboratory conditions. To validate the versatility of the above PCR-based diagnostic assay, we tested
            <italic>Pseudoophonus rufipes</italic>
            (=
            <italic>Harpalus rufipes</italic>
            ) (De Geer, 1774), a medium-size (11-16 mm length) carabid species, generalist feeder, with a wide (Palearctic) distribution, preferring open habitats (
            <xref ref-type="bibr" rid="b46">Thiele, 1977</xref>
            ;
            <xref ref-type="bibr" rid="b20">
               Honek
               <italic>et al.</italic>
               , 2013
            </xref>
            ). It is among the most active species in arable lands (
            <xref ref-type="bibr" rid="b27">L&#246;vei &amp; Sárospataki, 1990</xref>
            ;
            <xref ref-type="bibr" rid="b47">
               Thomas
               <italic>et al.</italic>
               , 1997
            </xref>
            ;
            <xref ref-type="bibr" rid="b6">Avgin &amp; Luff, 2009</xref>
            ) being mentioned as a biocontrol agent of several pests (
            <xref ref-type="bibr" rid="b24">Kromp, 1999</xref>
            ;
            <xref ref-type="bibr" rid="b44">Sunderland, 2002</xref>
            ;
            <xref ref-type="bibr" rid="b8">
               Boreau de Roincé
               <italic>et al.</italic>
               , 2012
            </xref>
            ). Its life cycle has been detailed described (
            <xref ref-type="bibr" rid="b30">Matalin, 1997</xref>
            ) and the species has showed peaks of activity during the period of highest abundance of
            <italic>B. oleae</italic>
            pupae (
            <xref ref-type="bibr" rid="b2">
               Albertini
               <italic>et al.</italic>
               , 2017
            </xref>
            ). In this study, we tested the post feeding detection of
            <italic>B. oleae</italic>
            within
            <italic>P. rufipes</italic>
            gut up to 20 h in both female and male predators, to assess if
            <italic>B. oleae</italic>
            <italic>COI</italic>
            fragments were still detectable in the carabids' gut. Finally, we extracted prey's DNA both from dissected and not dissected carabid specimens, aiming at improving
            <xref ref-type="bibr" rid="b38">
               Rejili
               <italic>et al.</italic>
               (2016)
            </xref>
            protocol in terms of efficiency and user-friendly features.
         </p>
         <p>
            Specifically, this study was designed to compare: i)
            <italic>B. oleae</italic>
            mtDNA detectability at different post feeding time intervals; ii) carabid female and male differences in prey detection time; iii) the sensitivity of two different pair primers designed to amplify two fragments of mtDNA
            <italic>COI</italic>
            gene of
            <italic>B. oleae</italic>
            and iv) the efficiency of the use of two different sample types for extracting DNA ("gut"
            <italic>vs</italic>
            "whole body" samples).
         </p>
         <p>
            The PCR-based assay optimization here presented may allow accurate analyses by means of molecular tools, prompting the development of quantitative measurements of predation in-field by the natural enemies of
            <italic>B. oleae</italic>
            pre-imaginal stages.
         </p>
      </sec>
      <sec id="S2">
         <title>Material and methods</title>
         <sec id="S2.1">
            <title>Insect collection</title>
            <p>
               Adult carabid beetles were collected from July to August 2016 in a maize field in Monte Pisano area (43&#176;40'06.8"N, 10&#176;37'05.9"E), Pisa, Italy. Specimens were collected alive, avoiding the use of preservatives in the traps, such as acid acetic and formaldehyde, since these compounds are known to inhibit PCR (
               <xref ref-type="bibr" rid="b18">Gurdebeke &amp; Maelfait, 2002</xref>
               ;
               <xref ref-type="bibr" rid="b22">
                  King
                  <italic>et al.</italic>
                  , 2008
               </xref>
               ). We used "semi-dry" pitfall traps described in
               <xref ref-type="bibr" rid="b3">
                  Albertini
                  <italic>et al.</italic>
                  (2018)
               </xref>
               , a method that combines the use of an attractant without the risk of compromising the subsequent molecular analysis. The traps were dug into the soil and levelled with the soil surface. Most of ground-dwelling carabids are active during the night (
               <xref ref-type="bibr" rid="b46">Thiele, 1977</xref>
               ) therefore traps were activated in the afternoon and collected in the morning after. Carabids were brought into the laboratory and identified to species and sex using a binocular stereomicroscope.
            </p>
            <p>
               According to a preliminary feeding trial performed in November 2015 in orchards located in Monte Pisano area using the above described "semi-dry" pitfall traps, we opted to run experiments on adult
               <italic>P. rufipes</italic>
               species as it is: i) easy to collect, without sex bias, by means of the described traps; ii) easy to rear and feed, being vital after 48 h of starvation and generally eating the offered prey in a short time (less than 24 h) and iii) active in those months when
               <italic>B. oleae</italic>
               pupae are more abundant in the soil.
            </p>
            <p>
               <italic>Bactrocera oleae</italic>
               pupae were collected from infested olives of orchards located in Monte Pisano area during Summer 2016.
               <italic>Ceratitis capitata</italic>
               (Wiedemann, 1824) (Diptera: Tephritidae) pupae were obtained from a labo­ratory culture maintained at the University of Pisa, Italy.
               <italic>C. capitata</italic>
               was used in order to test PCR primers specificity, since it is one of the main fruit flies widely distributed in the Mediterranean basin together with
               <italic>B. oleae</italic>
               , and the soil predators may feed on both pupae species. Pupae of
               <italic>B. oleae</italic>
               and
               <italic>C. capitata</italic>
               were stored in the fridge at 2&#176;C till they were used in feeding trials.
            </p>
         </sec>
         <sec id="S2.2">
            <title>Feeding trials</title>
            <p />
            <p>
               Adults of
               <italic>P. rufipes</italic>
               were individually placed in a plas­tic vessel (85 mm in diameter at the opening and 120 mm height), provided with water and a wet sponge shelter, maintained at room temperature and 16:8 h L:D from the beginning to the end of the experiments. Specimens were starved for 48 hours prior to experiments. Each
               <italic>P. rufipes</italic>
               was fed with one pupa that was introduced in each vessel, except those specimens used as negative control, where no food was provided.
            </p>
            <p>
               In the experiments with
               <italic>B. oleae</italic>
               pupae, 116 carabids were randomly assigned to groups with a different post feeding time: 2, 4, 6, 8, 9 to 15 and 16 to 20 h (16 to 20 carabids were used for each time period). In the experiments with
               <italic>C. capitata</italic>
               , only 2 h of post feeding time was considered (n=6). In the negative control experiments, carabids were not fed and were frozen after the starvation period (
               <italic>i.e.</italic>
               , 48 h) (n=6). In all the trials, sex ratio of carabids was 1:1.
            </p>
            <p>For each time, carabids were observed feeding. When they started to eat the pupae, they generally consumed it at once firstly piercing the cuticle and then eating the internal parts. We assumed that the prey was eaten after 90% of the pupa had been consumed, by the visual inspection of its volume, then we removed the remains from the vessel and started counting the post feeding time. After the post feeding time carabids were transferred individually into vials with ethanol 70% and frozen at -80&#176;C until molecular analyses.</p>
         </sec>
         <sec di="S2.3">
            <title>DNA extraction</title>
            <p />
            <p>
               The detection of
               <italic>B. oleae</italic>
               DNA in the gut of
               <italic>P. rufipes</italic>
               along the time was studied using two different approaches: (1) the "gut trial", where carabid guts were removed by dissection from 84 carabids (6 females and 6 males for each time period; 3 females and 3 males both for the experiments with
               <italic>C. capitata</italic>
               and for the negative control) and DNA was extracted from the dissected gut, and (2) the "whole body trial" (
               <italic>i.e.</italic>
               non-dissected specimens) where head, legs and elytra of 24 carabids, 13 female and 11 males (2 females and 2 males for each time period, except for the 9 to 15 h period where 1 female and 3 males were tested), were removed, and the rest of the body was ground to a fine powder in liquid nitrogen. The powder was used for DNA extraction. In both approaches, Ron's Tissue DNA Mini Kit (Boiron GmbH, Germany) was used to extract DNA, following the manufacturer's instruction, except that the incubation time was 24 h in our procedure instead of overnight.
            </p>
            <p>VWR&#174; mySPEC microvolume Spectrophotometer Twin 732-2535 was used to evaluate DNA concentration and purity by calculating A260/A280 ratio. After quantification, DNA pools from two individuals were prepared using 1:1 DNA ratio and further used for amplifications. DNA integrity was verified by gel electrophoresis in 1% (w/v) agarose gel, stained with GelRed Nucleic Acid Gel Stain (Biotium, USA), at 90 V for 20 min (constant voltage) and visualized under UV light using Stratagene Eagle Eye&#174; II video system (BioSurplus, USA).</p>
         </sec>
         <sec id="S2.4">
            <title>DNA amplification</title>
            <p />
            <p>
               The pair primers SBo1-F/SBo1-R and SBo2-F/SBo1-R, developed by
               <xref ref-type="bibr" rid="b38">
                  Rejili
                  <italic>et al.</italic>
                  (2016)
               </xref>
               specifically for the detection of
               <italic>B. oleae</italic>
               , were used to amplify two regions (108 bp and 214 bp, respectively) of the mitochondrial DNA
               <italic>cytochrome oxidase I</italic>
               (mtDNA
               <italic>COI</italic>
               ) gene of
               <italic>B. oleae</italic>
               . Conditions of the used PCR pro­tocol were described by
               <xref ref-type="bibr" rid="b38">
                  Rejili
                  <italic>et al.</italic>
                  (2016)
               </xref>
               . All PCRs included positive control (
               <italic>B. oleae</italic>
               DNA), negative control (the DNA extracted from the guts of starved specimens or fed with
               <italic>C. capitata</italic>
               ) and no template control (PCR reaction without template DNA). All carabids were screened using singleplex PCR analysis.
            </p>
            <p>PCR products were run on 2% (w/v) agarose gel, stained with GelRed Nucleic Acid Gel Stain (Biotium, USA), at 60 V for 60 min (constant voltage) along with a DNA ladder as molecular weight marker, and visualized under UV light using Stratagene Eagle Eye&#174; II video system (BioSurplus, USA).</p>
         </sec>
         <sec id="S2.5">
            <title>Data analysis</title>
            <p />
            <p>
               The success of the detection of
               <italic>B. oleae</italic>
               DNA in the gut of predators was assessed comparing the percentage of positive amplifications for i) different post feeding times; ii) the two pair primers; iii) females and males and iv) "gut" and "whole body" samples. In the tests, post feeding times from 2 h to 8 h were grouped in a unique class in order to compare a short time interval (
               <italic>i.e.</italic>
               , until 8 h) with medium (from 9 to 15 h) and larger (from 16 to 20 h) post feeding time. Chi-squared test with Yates's correction was used to compare the variables in 2x2 contingency tables. When sample size was small and/or expected frequencies were low, Fisher's exact test was used (
               <xref ref-type="bibr" rid="b31">McDonald, 2009</xref>
               ). Significance was reported at the level of
               <italic>p</italic>
               &lt; 0.05.
            </p>
            <p>
               To evaluate the efficiency of the use of two different sample types for extracting DNA, both the quantity ([DNA] &#956;g/&#956;L) and the quality (estimated by 260/280 purity ratio) of the extracted DNA were compared. Normality was assessed by Shapiro-Wilk test (
               <italic>p</italic>
               &lt; 0.05). Being the assumption of normality not respected, and with an unequal sample sizes, Mann-Whitney U test (also known as Wilcoxon rank-sum test) was applied to determine whether difference occurred between "gut trial" and "whole body trial". Significance was reported at the level of
               <italic>p</italic>
               &lt; 0.05. All the analyses were carried out using R software (
               <xref ref-type="bibr" rid="b37">R Core Team, 2016</xref>
               ).
            </p>
         </sec>
      </sec>
      <sec id="S3">
         <title>Results</title>
         <p>
            A specific amplification with the predicted products of
            <italic>B. oleae COI</italic>
            gene fragments (108 and 214 bp) was generated by the use of both pairs of primers up to 20 h after prey ingestion for both female and male predators (<xref ref-type="fig" rid="F1">Fig. 1</xref>). No amplification was revealed when DNA extracted from carabids fed with
            <italic>C. capitata</italic>
            or starved carabids were used (<xref ref-type="fig" rid="F2">Fig. 2</xref>).
         </p>
		 <fig id="F1">
    <label>Figure 1.</label>
    <caption>
    <title>Agarose gel electrophoresis for the "gut trial" of <italic>Pseudoophonus rufpes</italic>,
using <italic>Bactrocera oleae</italic> specifc primer pairs SBo1-F/SBo1-R (upper lanes) and
SBo2-F/SBo1-R (lower lanes). Female (f) and male (m) 2h (2), 4h (4), 6h (6), 8h (8),
9-15h (9-15) and 16-20h (16-20) post feeding. Lane M is a 100 bp DNA ladder and the
C- lane is no template control.</title>
    </caption>
    <graphic xlink:href="sjar_e1007_f01.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</fig>
<fig id="F2">
    <label>Figure 2.</label>
    <caption>
    <title>Agarose gel electrophoresis using <italic>B. oleae</italic> specifc primer pairs SBo1-F/
SBo1-R (lanes left to marker - M) and SBo2-F/SBo1-R (lanes right to marker). a:
male <italic>P. rufpes</italic> fed with <italic>C. capitata</italic>. b: female <italic>P. rufpes</italic> fed with <italic>C. capitata</italic>. c: male
P. rufpes not fed. d: female P. rufpes not fed. e, f, g: females 2 h post feeding. C-:
no template control. M: 100 bp DNA ladder. 1: frst pair primers SBo1-F/SBo1-R. 2:
second pair primers SBo2-F/SBo1-R</title>
    </caption>
    <graphic xlink:href="sjar_e1007_f02.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</fig>


         <p>For all the post feeding treatments, 160 PCRs were carried out in total, 146 of which showed specific amplification. For all sample types, 90.36% showed positive amplifications with the first pair primers (SBo1-F/SBo1-R, 83 PCRs in total) and 92.21% with the second pair (SBo2-F/SBo1-R, 77 PCRs in total). No significant differences were found when compared the overall success of the two pair primers and when compared short, medium and large time intervals (<xref ref-type="table" rid="T1">Table 1</xref>).</p>
<table-wrap id="T1">
    <label>Table 1.</label>
    <caption>
    <title> Results of Chi-squared test with Yates' correction
(df=1) and Fisher's exact test (p-values) for comparisons
between primers, feeding times, sexes and sample types.</title>
    </caption>
    <graphic xlink:href="sjar_e1007_t01.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</table-wrap>

         <p>
            Female carabids obtained 89.29% of positive amplifications, male carabids 93.42% and no statis­tically significant differences were found between sexes (<xref ref-type="table" rid="T1">Table 1</xref>). Considering "gut" and "whole body" samples, 89.84% and 96.86%, respectively, responded positively to
            <italic>B. oleae</italic>
            detection, differences being again not statistically significant (<xref ref-type="table" rid="T1">Table 1</xref>).
         </p>
         <p>
            For the "gut trial" samples (128 PCRs),
            <italic>B. oleae</italic>
            DNA fragments were detected in all the post feeding time treatments, ranging from 79.41% to 100% of positive amplifications. Higher rates were found for 2, 4, 6 and 8h post feeding (from 83.33% to 100%). Nine-15 and 16-20 h treatments had, respectively, 79.41% and 89.29% of successful amplifications. In comparing the total percentage of successful amplifications using the two pair primers, the first pair had 87.5% of positive results and the second 92.19% (<xref ref-type="fig" rid="F3">Fig. 3</xref>). Females had 88.06% of successful amplifications and males 91.80%. Comparisons among the efficiency of the two pair primers and any differences among sexes revealed no statistically significant differences (<xref ref-type="table" rid="T1">Table 1</xref>).
         </p>
		 <fig id="F3">
    <label>Figure 3.</label>
    <caption>
    <title>Positive amplifcations (%) for detecting <italic>B. oleae</italic>
in the gut of <italic>P. rufpes</italic> by comparing the "gut trial" and the
"whole body trial" samples at different post feeding times.
PCRs were performed using two pair primers: SBo1-F/
SBo1-R (dark grey bars) and SBo2-F/SBo1-R (light grey
bars).</title>
    </caption>
    <graphic xlink:href="sjar_e1007_f03.jpg" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</fig>

         <p>For the "whole body trial" samples (32 PCRs), the per­centage of positive amplifications was 100% for all post feeding time treatments, except for 16-20 h treatment where there was 80% of success (4 positive samples out of 5 assays). The first pair of primers gave 100% of positive results, the second pair 92.31% (12 positive samples out of 13 assays) (<xref ref-type="fig" rid="F3">Fig. 3</xref>). Females had 94.12% of positive results and males 100%. Comparisons among the efficiency of the two pair primers and among sexes revealed no statistically significant differences (<xref ref-type="table" rid="T1">Table 1</xref>).</p>
         <p>
            When comparing the quantity and quality of the extracted DNA, the average value was 457.90 (SE=31.80, n=58) &#956;g/&#956;L and the ratio 260/280 was 2.11 (SE=0.02, n=58) for the "gut trial" while for the "whole body trial" values were 586.74 (SE=84.81, n=12) &#956;g/&#956;L and 2.10 (SE=0.03, n=12) respectively. Differences were statistically not significant for DNA quantity (
            <italic>p</italic>
            =0.10) nor quality (
            <italic>p</italic>
            =0.37).
         </p>
      </sec>
      <sec id="S4">
         <title>Discussion</title>
         <p>
            Our laboratory study has demonstrated that it is possible to detect
            <italic>B. oleae</italic>
            consumption in carabids' gut at least up to 20 h since pupa ingestion, for both female and male predators that consumed one
            <italic>B. oleae</italic>
            pupa only. There are new elements compared to
            <xref ref-type="bibr" rid="b38">
               Rejili
               <italic>et al.</italic>
               (2016)
            </xref>
            , which confirm the validity of their protocol and prove its versatility and sensitiveness. There is a general increasing interest in the tested species
            <italic>P. rufipes</italic>
            , which has already been proposed both as pest control agent and useful seed consumer (
            <xref ref-type="bibr" rid="b50">
               Wallinger
               <italic>et al.</italic>
               , 2015
            </xref>
            ). Since it is also active in olive orchards when pest pupae are more abundant in the soil (
            <xref ref-type="bibr" rid="b2">
               Albertini
               <italic>et al.</italic>
               , 2017
            </xref>
            ),
            <italic>P. rufipes</italic>
            may be used as a good model species for testing its efficiency as
            <italic>B. oleae</italic>
            natural enemy.
         </p>
         <p>
            DNA-based diet analyses may allow verifying prey con­sumption on field, once the calibratory fee­ding trials have been carried out in laboratory. The chance to detect the DNA of a prey for a given predator can differ significantly and refers specifically to that prey-predator system (
            <xref ref-type="bibr" rid="b23">
               King
               <italic>et al.,</italic>
               2010
            </xref>
            ). The laboratory feeding trial are a needed step for the meaningful interpretation of the field results and the extrapolation of the prey-detection period from one prey-predator system to another. In field experiments, traps are checked the day after their activation, as most carabids have nocturnal predatory habits.
            <xref ref-type="bibr" rid="b52">
               Zaidi
               <italic>et al.</italic>
               (1999)
            </xref>
            suggested that covering an interval of at least 12 h between supposed prey consumption during the night and predator collection the next morning is an adequate amount of time for subsequent molecular analysis. Since
            <italic>B. oleae</italic>
            consumption can be detected up to 20 h post feeding time, this may allow researchers to activate the traps for a longer time still obtaining reliable results. Moreover, recent studies have proved for
            <italic>P. rufipes</italic>
            a DNA detectability over 30 h for other preys (seeds included) (
            <xref ref-type="bibr" rid="b32">
               Monzó
               <italic>et al.</italic>
               , 2011
            </xref>
            ;
            <xref ref-type="bibr" rid="b50">
               Wallinger
               <italic>et al.</italic>
               , 2015
            </xref>
            ). In addition, since
            <xref ref-type="bibr" rid="b10">Cornic (1973)</xref>
            reported for
            <italic>P. rufipes</italic>
            seasonal variations in the type of ingested food, this element should be taken into consideration both for field and laboratory experiments.
         </p>
         <p>
            Recently
            <xref ref-type="bibr" rid="b25">
               Lantero
               <italic>et al.</italic>
               (2017)
            </xref>
            detected
            <italic>B. oleae</italic>
            consumption in two Mediterranean carabid species up to 72 h, however sex bias was not tested. Predator sex is frequently considered a factor affecting food intake and thus prey detection (
            <xref ref-type="bibr" rid="b43">Sunderland, 1975</xref>
            ) and for carabids results are contradictory. We did not find any statistically significant difference among sexes in prey detection, confirming the results obtained by
            <xref ref-type="bibr" rid="b52">
               Zaidi
               <italic>et al.</italic>
               (1999)
            </xref>
            . However, there could be behavioural differences in the field, being males generally more active and females showing diet seasonality (
            <xref ref-type="bibr" rid="b42">
               Sheppard
               <italic>et al.</italic>
               , 2005
            </xref>
            ;
            <xref ref-type="bibr" rid="b41">
               &#352;eric Jelaska
               <italic>et al.</italic>
               , 2014
            </xref>
            ;
            <xref ref-type="bibr" rid="b40">&#352;eric Jelaska &amp; Symondson, 2016</xref>
            ). Therefore, we still suggest considering sex identity for future analysis.
         </p>
         <p>
            Meal size and amount have been often shown to affect the DNA detectability in the predator's gut (
            <xref ref-type="bibr" rid="b22">
               King
               <italic>et al.</italic>
               , 2008
            </xref>
            ), however responses are not homogeneous. For example,
            <xref ref-type="bibr" rid="b52">
               Zaidi
               <italic>et al.</italic>
               (1999)
            </xref>
            demonstrated that there is no correlation between the number of preys consumed by the predators and the likelihood of successful prey DNA amplification, while
            <xref ref-type="bibr" rid="b23">
               King
               <italic>et al.</italic>
               (2010)
            </xref>
            found a strong effect of the meal size. In addition, it has been hypothesized that feeding the starved individuals with a large amount of prey, if not
            <italic>ad libitum</italic>
            , may bias towards longer post ingestion detection (
            <xref ref-type="bibr" rid="b1">
               Aebi
               <italic>et al.</italic>
               , 2011
            </xref>
            ). In our test only one pupa was provided to each carabid, its consumption being detected with high percentage of success. Unless feeding trials with specific purposes should be carried out, we suggest providing the tested predators with the minimum amount of food, necessary and sufficient for a reliable molecular analysis. In such way there are three main advantages: it is a cost-effective solution, it reflects better the prey availability and accessibility in the field for a given predator, and it can be helpful when prey population size is controlled in experimental settings.
         </p>
         <p>
            We compared the efficiency of two pair primers, amplifying for a shorter (108 bp) and a longer (214 bp) mtDNA region. Comparisons were made considering the overall reactions and reactions for specific post feeding time, and no statistically significant differences were found. Fragment size can affect DNA detectability, and short fragments (&lt; 300 bp) are usually suggested (
            <xref ref-type="bibr" rid="b22">
               King
               <italic>et al.</italic>
               , 2008
            </xref>
            ), even if for
            <italic>P. rufipes</italic>
            also medium-sized fragments allowed long prey DNA detection intervals (
            <xref ref-type="bibr" rid="b49">
               Waldner
               <italic>et al.</italic>
               , 2013
            </xref>
            ). Besides both pair primers we tested proved to be highly efficient and specific for
            <italic>B. oleae</italic>
            , it is still preferable to use both of them, especially for field-collected carabids, where the probabilities to obtain positive results are lower than in laboratory-controlled experiments (
            <xref ref-type="bibr" rid="b42">
               Sheppard
               <italic>et al.</italic>
               , 2005
            </xref>
            ;
            <xref ref-type="bibr" rid="b1">
               Aebi
               <italic>et al.</italic>
               , 2011
            </xref>
            ). In fact, for field-collected predators there is no
            <italic>a priori</italic>
            knowledge whether predation has occurred, and a number of additional factors, including PCR-inhibitory substances that edaphic arthropods may enter in contact with, may affect successful amplification of prey DNA (
            <xref ref-type="bibr" rid="b21">Juen &amp; Traugott, 2006</xref>
            ). A less time-consuming approach may be the use of a multiplex PCR (
            <xref ref-type="bibr" rid="b19">
               Harper
               <italic>et al.</italic>
               , 2005
            </xref>
            ), instead of two separate singleplex PCRs, one for each pair primer.
         </p>
         <p>
            No significant differences were found in the success of prey detection between carabids used in the "gut trial" and those used in the "whole body trial". Nor DNA quantity nor DNA purity were affected by the two sample types. The choice in dissecting or not dissecting a specimen has been discussed in
            <xref ref-type="bibr" rid="b22">
               King
               <italic>et al.</italic>
               (2008)
            </xref>
            . The carabid species we used was relatively large in size, thus dissection was not impeded by its body dimension. It has to be stated that prey DNA extraction from the predator's gut relies on a certain expertise of the researcher in opening the gut and selecting the target carabid's material. In this case, the preparation of each dissected sample for the DNA extraction usually requires, as a rule of thumb, 20 min on average, before the 24 h of the sample incubation. On the opposite, DNA extraction from the whole body is a faster and more user-friendly procedure, as the beetle is not manipulated (except for bigger and chitinous appendices removal). However, its efficiency strongly relies on the body grinding procedure with liquid nitrogen, as a fine powder is needed. Because of this procedure, we estimate that the preparation of each non-dissected sample requires again 20 min on average. Being the two methods almost comparable for a predator of medium to large body size, the choice of the most convenient method may be driven by laboratory's equipment and expertise level.
         </p>
         <p>
            In conclusion, we used the protocol of
            <xref ref-type="bibr" rid="b38">
               Rejili
               <italic>et al.</italic>
               (2016)
            </xref>
            introducing relevant modifications prior to the step of DNA extraction. The new protocol still ensures the extraction of quality DNA and offers many practical advantages such as cost-effective feeding trials and easy handling of specimens. The protocol is particularly suitable for field experiments, in which we suggest the collection of predators by means of "semi-dry" pitfall traps that allow carabids collection without the use of PCR inhibitors. This trapping system, together with the protocol, has been recently used for field-collected staphylinids in olive orchards, successfully demonstrating
            <italic>B. oleae</italic>
            consumption in
            <italic>Ocypus olens</italic>
            (M&#252;ller, 1764) (Coleoptera: Staphylinidae) (
            <xref ref-type="bibr" rid="b3">
               Albertini
               <italic>et al.</italic>
               , 2018
            </xref>
            ). The assessment of
            <italic>B. oleae</italic>
            consumption by field predators may be particularly advantageous in developing biological control strategies against the most harmful pest of olive orchards.
         </p>
      </sec>
      <sec id="S5">
         <title>Acknowledgements</title>
         <p>
            We are particularly grateful to Gaia Monteforti for collecting carabids and Prof. Angelo Canale for providing
            <italic>C. capitata</italic>
            pupae. We thank Teresa Gomes, Gisela Fernandes and Diogo Mina for their laboratory assistance. We thank the anonymous reviewers and the editor for their comments to improve our manuscript.
         </p>
      </sec>
   </body>
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</article>