Caracterización molecular de accesiones autóctonas de higo de Turquía

  • O. Caliskan Department of Horticulture, Faculty of Agriculture, University of Mustafa Kemal, 31034 Antakya, Hatay, Turkey
  • A. A. Polat Department of Horticulture, Faculty of Agriculture, University of Mustafa Kemal, 31034 Antakya, Hatay, Turkey
  • P. Celikkol Biotechnology Institute, Ankara University, Ankara, Turkey
  • M. Bakir Biotechnology Institute, Ankara University, Ankara, Turkey
Palabras clave: diversidad genética, Ficus carica, RAPD, SSR

Resumen

Turquía es uno de los principales centros genéticos de la higuera, Ficus carica L. Se evaluó, mediante análisis de 10 loci de microsatélites o repeticiones de secuencias simples (SSR), la variabilidad genética de 76 accesiones de higuera muestreadas en la provincia Hatay de Turquía. El número de alelos revelados por análisis SSR varió de 3 a 12 por locus con una media de 6,8; se detectaron en total 68 alelos y la heterocigosidad promedio fue mayor que la heterocigosidad esperada. Además, siete cebadores RAPD detectaron un total de 68 bandas claras y reproducibles, de las cuales 55 fueron polimórficas, por lo que estas accesiones de higuera pudieron ser eficazmente caracterizadas utilizando ambas técnicas. Tanto con SSRs como con RAPDs, la similitud y las correlaciones cofenéticas mediante la prueba de Mantel fueron moderadamente altas (0,90 para RAPD y 0,87 para SSR), lo que demuestra que los patrones de agrupamiento se ajustan bien a los datos. Los grupos obtenidos con este tipo de marcadores fueron independientes. Este estudio encontró una gran variabilidad genética entre accesiones autóctonas de higuera, lo que las hace una fuente valiosa para su incorporación potencial en programas de mejora, especialmente para higos de mesa.

Descargas

La descarga de datos todavía no está disponible.

Biografía del autor/a

O. Caliskan, Department of Horticulture, Faculty of Agriculture, University of Mustafa Kemal, 31034 Antakya, Hatay, Turkey
Fruit culture and breeding
A. A. Polat, Department of Horticulture, Faculty of Agriculture, University of Mustafa Kemal, 31034 Antakya, Hatay, Turkey
Fruit culture and breeding
P. Celikkol, Biotechnology Institute, Ankara University, Ankara, Turkey
Plant Biotechnology
M. Bakir, Biotechnology Institute, Ankara University, Ankara, Turkey
Plant Biotechnology

Citas

Aksoy U, Can HZ, Misirli A, Kara S, Seferoglu G, Sahin N, 2003. Fig (Ficus carica L.) selection study for fresh market in Western Turkey. Acta Hortic 605: 197-203.

Bandelj D, Javornik B, Jakse J, 2007. Development of microsatellite markers in the common fig, Ficus carica L. Mol Ecol Notes 7: 1311-1314. http://dx.doi.org/10.1111/j.1471-8286.2007.01866.x

Baraket G, Chatti K, Saddoud O, Mars M, Marrakchi M, Trifi M, Hannachi AS, 2009. Genetic analysis of Tunisian fig (Ficus carica L.) cultivars using amplified fragment length polymorphism (AFLP) markers. Sci Hortic 120: 487-492. http://dx.doi.org/10.1016/j.scienta.2008.12.012

Baranek M, Raddova J, Pidra M, 2006. Comparative analysis of genetic diversity in Prunus L. as revealed by RAPD and SSR markers. Sci Hortic 108: 253-259. http://dx.doi.org/10.1016/j.scienta.2006.01.023

Beck NG, Lord EM, 1988. Breeding system in Ficus carica, the common fig. I. Floral diversity. Am J Bot 75: 1904-1912. http://dx.doi.org/10.2307/2444745

Bowcock AM, Ruiz-Linares A, Tomfohrde J, Minch E, Kidd JR, Cavalli-Sforza LL, 1994. High resolution of human evolutionary trees with polymorphic microsatellites. Nature 368: 455-457. http://dx.doi.org/10.1038/368455a0 PMid:7510853

Cabrita LF, Aksoy U, Hepaksoy S, Leitao JM, 2001. Suitability of isozyme, RAPD and AFLP markers to assess genetic differences and relatedness among fig (Ficus carica L.) clones. Sci Hortic 87: 261-273. http://dx.doi.org/10.1016/S0304-4238(00)00181-3

Chakravarthy BK, Naravaneni R, 2006. SSR marker based DNA fingerprinting and diversity study in rice (Oryza sativa. L). Afr J Biotech 5: 684-688.

Çali?kan O, Polat AA, 2008. Fruit characteristics of fig cultivars and genotypes grown in Turkey. Sci Hortic 115: 360-367. http://dx.doi.org/10.1016/j.scienta.2007.10.017

Ergul A, Marasali B, Agao?lu YS, 2002. Molecular discrimination and identification of some Turkish grape cultivars (Vitis vinifera L.) by RAPD markers. Vitis 41: 159-160.

Eroglu AS, 1982. Fig selection project. Erbeyli Agriculture Research Institute, Ayd?n, Turkey.

Giraldo E, Viruel MA, Lopez-Corrales M, Hormaza JI, 2005. Characterisation and cross-species transferability of microsatellites in common fig (Ficus carica L.). J Hortic Sci Biotech 80: 217-224.

Ikegami H, Nogata H, Hirashima K, Awamura M, Nakahara T, 2009. Analysis of genetic diversity among European and Asian fig varieties (Ficus carica L.) using ISSR, RAPD and SSR markers. Genet Resour Crop Evol 56: 201-209. http://dx.doi.org/10.1007/s10722-008-9355-5

Ikten H, Mutlu N, Gulsen O, Kocatas H, Aksoy U, 2010. Elucidating genetic relationships, diversity and population structure among the Turkish female figs. Genetica 138: 169-177. http://dx.doi.org/10.1007/s10709-009-9400-0 PMid:19711187

Ilgin M, Kuden AB, 1998. Table fig selections study in the Kahramanmaras province of Turkey. Acta Hortic 441: 351-358.

Khadari B, Hochu I, Santoni S, Kjellberg F, 2001. Identification and characterization of microsatellite loci in the common fig (Ficus carica L.) and representative species of the genus Ficus. Mol Ecol Notes 1: 191-193. http://dx.doi.org/10.1046/j.1471-8278.2001.00072.x

Khadari B, Hochu I, Santoni S, Oukabli A, Ater M, Roger JP, Kjellberg F, 2003. Which molecular markers are best suited to identify fig cultivars: a comparison of RAPD, ISSR and microsatellite markers. Acta Hortic 605: 69-75.

Khadari B, Oukabli A, Ater M, Mamouni A, Roger JP, Kjellber F, 2004. Molecular characterization of Moroccan fig germplasm using intersimple sequence repeat and simple sequence repeat markers to establish a reference collection. HortScience 40: 29-32.

Kjellberg F, Gouyon PH, Ibrahim M, Raymond M, Valdeyron G, 1987. The stability of the symbiosis between dioecious figs and their pollinators: a study of Ficus carica L. and Blastophaga psenes L. Evolution 41: 693-704. http://dx.doi.org/10.2307/2408881

Leal AA, Mangolin CA, Do Amaral Junior AT, Gonçalves LSA, Scapim CA, Mott AS, Eloi IBO, Cordoves V, Da Silva MFP, 2010. Efficiency of RAPD versus SSR markers for determining genetic diversity among popcorn lines. Genet Mol Res 9: 9-18. http://dx.doi.org/10.4238/vol9-1gmr692 PMid:20082266

Lefort F, Lally M, Thompson D, Douglas GC, 1998. Morphological traits, microsatellite fingerprinting and genetic relatedness of a stand of elite oaks (Q. robur L.) at Tullynally, Ireland. Silvae Genet 47: 5-6.

Minch E, Ruiz-Linares A, Goldstein DB, Feldman M, Cavalli-Sforza LL, 1995. Microsat (version 1.5d): a computer program for calculating various statistics on microsatellite allele data. Stanford Univ, Palo Alto, CA, USA.

Paetkau D, Calvert W, Stirling I, Strobeck C, 1995. Microsatellite analysis of population structure in Canadian polar bears. Mol Ecol 4: 347-354. http://dx.doi.org/10.1111/j.1365-294X.1995.tb00227.x PMid:7663752

Polat AA, Caliskan O, 2008. Fruit characteristics of table fig (Ficus carica) cultivars in subtropical climate conditions of the Mediterranean region. New Zeal J Crop Hort Sci 36: 107-115. http://dx.doi.org/10.1080/01140670809510226

Rohlf FJ, 1998. NTSYS-pc: Numerical Taxonomy and Multivariate Analysis System, version 2.0, user's guide. Exeter Software, Setauket, NY, USA.

Salhi-Hannachi A, Chatti K, Mars M, Marrakchi M, Trifi M, 2005. Comparative analysis of genetic diversity in two Tunisian collections of fig cultivars based on random amplified polymorphic DNA and inter simple sequence repeats fingerprints. Genet Resour Crop Evol 52: 563-573. http://dx.doi.org/10.1007/s10722-003-6096-3

Salhi-Hannachi A, Chatti K, Saddoud O, Mars M, Rhouma A, Marrakchi M, Trifi M, 2006. Genetic diversity of different Tunisian fig (Ficus carica L.) collections revealed by RAPD fingerprints. Hereditas 143: 15-22. http://dx.doi.org/10.1111/j.2005.0018-0661.01904.x PMid:17362329

Sneath PHA, Sokal RR, 1973. Numerical taxonomy. Freeman, San Francisco, CA, USA.

Soriano JM, Zuriaga Z, Rubio P, Llácer G, Infante R, Badenes ML, 2011. Development and characterization of microsatellite markers in pomegranate (Punica granatum L.). Mol Breeding: 119-128. http://dx.doi.org/10.1007/s11032-010-9511-4

Tangolar SG, Soydam S, Bakir M, Karaagaç E, Tangolar S, Ergul A, 2009. Genetic analysis of grapevine cultivars from the eastern Mediterranean region of Turkey based on SSR Markers. Tar?m Bilimleri Dergisi 15: 1-8.

Uzun HI, Polat I, Gözlekci S, 2003. Molecular identification of Turkish fig cultivars by fruit and leaf isozymes. Acta Hortic 605: 45-50.

Vinson JA, 1999. The functional food properties of fig. Cereal Foods World 4: 82-87.

Wagner HW, Sefc KM, 1999. Identity 1.0. Centre for Applied Genetics, Univ Agric Sci, Vienna.

Watson L, Dallwitz MJ, 2004. The families of flowering plants: descriptions, illustrations, identification, and information retrieval. Available in http://delta-intkey.com [20 May, 2010].

Zavodna M, Arens P, Van Dijk P, Vosman B, 2005. Development and characterization of microsatellite markers for two dioecious Ficus species. Mol Ecol Notes 5: 355-357. http://dx.doi.org/10.1111/j.1471-8286.2005.00924.x

Publicado
2012-02-29
Cómo citar
Caliskan, O., Polat, A. A., Celikkol, P., & Bakir, M. (2012). Caracterización molecular de accesiones autóctonas de higo de Turquía. Spanish Journal of Agricultural Research, 10(1), 130-140. https://doi.org/10.5424/sjar/2012101-094-11
Sección
Mejora vegetal, genética y recursos genéticos