Identification and pathogenicity of Rhizoctonia solani AG-4 causing root rot on chickpea in Turkey
Abstract
In the 2016-17 growing seasons, surveys were conducted in the Isparta, Uşak, Kütahya and Denizli provinces of Turkey to identify the Rhizoctonia solani AG-4 associated with root and crown rot of chickpea. A total of 75 isolates of Rhizoctonia were obtained from surveyed areas. Visual diagnostic, isolation and microscopic observation identified the causal organism as R. solani. Sequence data of the ITS rDNA region confirmed the species identity and revealed that the anastomosis group of the 23 isolates were AG-4 HGII. The isolates were variable in their morphological characters. The sequences generated during this study were clustered in the same branch with the reference isolates of R. solani AG-4 HGII based on their ITS sequencing on chickpea and the isolate grouping was not related to their geographic origins or virulence pattern. Pathogenicity tests revealed that all AG-4 isolates were pathogenic on chickpea and the disease severity values of 23 isolates varied between 42.8% and 100%. Based on the virulence, the isolates were grouped into two categories: 5 of them exhibited moderately virulence and 18 of them exhibited highly virulence reaction on chickpea. The high virulent isolate level (>50% disease severity) was determined as 78.2% of all 23 isolates. This is the first report of R. solani AG-4 as a pathogen of chickpea in Turkey.
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References
Anderson NA, 1982. The genetics and pathology of Rhizoctonia solani. Ann Rev Phytopathol 20: 329-347. https://doi.org/10.1146/annurev.py.20.090182.001553
Bandoni RJ, 1979. Safranin-O as a rapid nuclear stain for fungi. Mycologia 71: 873-874. https://doi.org/10.1080/00275514.1979.12021088
Bayraktar H, Dolar FS, 2009. Genetic diversity of wilt and root rot pathogens of chickpea, as assessed by RAPD and ISSR. Turk J Agr For Sci 33: 1-10.
Boysen M, Borja M, del Moral C, Salazar O, Rubio V, 1996. Identification at strain level of Rhizoctonia solani AG-4 isolates by direct sequence of asymmetric PCR products of the ITS regions. Curr Genet 29: 174-181. https://doi.org/10.1007/BF02221582
Burpee LL, Sander PL, Sherwood RT, 1980. Anastomosis group among isolates of Ceratobasidium cornigerum (Bourd) Rogers and related fungi. Mycologia 72: 689-701. https://doi.org/10.1080/00275514.1980.12021238
Carling DE, Kuninaga S, Leiner RH, 1988. Relatedness within and among intraspecific groups of Rhizoctonia solani: A comparison of grouping by anastomosis and by DNA hybridization. Phytoparasitica 16: 209-210.
Carling DE, Pope EJ, Brainard KA, Carter DA, 1999. Characterization of mycorrhizal isolates of Rhizoctonia solani from an orchid, including AG-12, a new anastomosis group. Phytopathology 89 (10): 942-946. https://doi.org/10.1094/PHYTO.1999.89.10.942
Carling DE, Baird RE, Gitaitis RD, Brainard KA, Kuninaga S, 2002. Characterization of AG-13, a newly reported anastomosis group of Rhizoctonia solani. Phytopathology 92 (8): 893-899. https://doi.org/10.1094/PHYTO.2002.92.8.893
Demirci E, 1998. Rhizoctonia species and anastomosis groups isolated from barley and wheat in Erzurum, Turkey. Plant Pathol 47 (1): 10-15. https://doi.org/10.1046/j.1365-3059.1998.00214.x
Demirci E, Eken C, Kantar F, 1998. Wilt and root rot pathogens of chickpea cv. "Aziziye-94". J Plant Pathol 80 (2): 175.
Demirci E, Eken C, Zengin H, 2002. First report of Rhizoctonia solani and binucleate Rhizoctonia from Johnsongrass in Turkey. Plant Pathol 51: 391. https://doi.org/10.1046/j.1365-3059.2002.00704.x
Dolar FS, 1996. Survey of chickpea diseases in Ankara, Turkey. Int Chickpea Pigeonpea Newslet 3: 33-35.
Dubey SC, Dwivedi RP, 2000. Diseases of leguminous crops caused by Rhizoctonia solani and their management. In: Advances in plant disease management; Udit N, Kumar K, Srivastava M (eds). Adv Publ Concept, New Delhi, India, pp: 61-76.
Dubey SC, Tripathi A, Upadhyay BK, Thakur M, 2011. Pathogenic behaviour of leguminous isolates of Rhizoctonia solani collected from different Indian agro-ecological regions. Ind J Agr Sci 81: 64-69.
Dubey SC, Tripathi A, Upadhyay BK, Deka UK, 2014. Diversity of Rhizoctonia solani associated with pulse crops in different agro-ecological regions of India. World J Microbiol Biotechnol 30: 1699-1715. https://doi.org/10.1007/s11274-013-1590-z
Eken C, Demirci E, 2004. Anastomosis groups and pathogenicity of Rhizoctonia solani and binucleate Rhizoctonia isolates from bean in Erzurum, Turkey. J Plant Pathol 86 (1): 49-52.
El-Samawaty AMA, Amal A, Asran MR, Omar, Abd-Elsalam KA, 2008. Anastomosis groups, pathogenicity, and cellulase production of Rhizoctonia solani from cotton. Pest Technol 1 (2): 117-124.
Erper İ, Karaca GH, Özkoç İ, 2011. Identification and pathogenicity of Rhizoctonia species isolated from bean and soybean plants in Samsun, Turkey. Archiv Phytopathol Plant Prot Abingdon, 44: 78-84. https://doi.org/10.1080/03235400903395427
Fenille RC, Ciampi MB, Kuramae EE, Souza NL, 2003. Identification of Rhizoctonia solani associated with soybean in Brazil by rDNA-ITS sequences. Fitopatol Bras 28 (4): 413-418. https://doi.org/10.1590/S0100-41582003000400011
Ganeshamoorthi P, Dubey SC, 2013. Anastomosis grouping and genetic diversity analysis of Rhizoctonia solani isolates causing wet root rot in chickpea. Afr J Biotechnol 12 (43): 6159-6169. https://doi.org/10.5897/AJB2013.12439
Ganeshamoorthi P, Dubey SC, 2015. Morphological and pathogenic variability of R. solani isolates associated with wet root rot of chickpea in India. Legume Res 383): 389-395. https://doi.org/10.5958/0976-0571.2015.00123.X
González D, Cubeta MA, Vilgalys R, 2006. Phylogenetic utility of indels within ribosomal DNA and beta-tubulin sequences from fungi in the Rhizoctonia solani species complex. Mol Phylogen Evol 40: 459-470. https://doi.org/10.1016/j.ympev.2006.03.022
Hwang SF, Gossen BD, Chang KF, Turnbull GD, Howard RJ, Blade SF, 2003. Etiology and impact of Rhizoctonia seedling blight and root rot of chickpea on the Canadian prairies. Can J Plant Sci 83: 959-967. https://doi.org/10.4141/P02-165
Hyakumachi M, Mushika T, Ogiso Y, Toda T, Kageyama K, Tsuge T, 1998. Characterization of a new cultural type (LP) of Rhizoctonia solani AG-2-2 isolated from warm-season turfgrasses, and its genetic differentiation from other cultural types. Plant Pathol 47: 1-9. https://doi.org/10.1046/j.1365-3059.1998.00212.x
Ichielevich-Auster M, Sneh B, Koltin Y, Barash I, 1985. Suppression of damping-off caused by Rhizoctonia species by a nonpathogenic isolate of R. solani. Phytopathology 75: 1080-1084. https://doi.org/10.1094/Phyto-75-1080
Kılıçoğlu MÇ, Özkoç İ, 2013. Phylogenetic analysis of Rhizoctonia solani AG-4 isolates from common beans in Black Sea coastal region, Turkey, based on ITS-5.8S rDNA, Turk J Biol 37: 18-24.
Kronland WC, Stanghellini ME, 1988. Clean slide technique for the observation of anastomosis and nuclear condition of Rhizoctonia solani. Phytopathology 78: 820-822. https://doi.org/10.1094/Phyto-78-820
Kuninaga S, Natsuaki T, Takeuchi T, Yokosawa R, 1997. Sequence variation of the rDNA ITS regions within and between anastomosis groups in Rhizoctonia solani. Curr Genet 32: 237-243. https://doi.org/10.1007/s002940050272
Kural İ, Sagır A, Tatli F, 1994. Characterization and pathogenicity of anastomosis groups of Rhizoctonia solani isolated from cotton in Southeastern Turkey. 9th Congr Mediterr Phytopath Union, Kuşadası Aydın, Turkey, pp: 117-120.
Kuramae EE, Buzeto AL, Ciampi MB, Souza NL, 2003. Identification of Rhizoctonia solani AG 1-IB in lettuce, AG 4 HG-I in tomato and melon, and AG 4 HG-III in broccoli and spinach, in Brazil. Eur J Plant Pathol 109: 391-395.
Mikhail MS, Sabet KK, Omar MR, Amal AA, Kasem KK, 2010. Current Rhizoctonia solani anastomosis groups in Egypt and their pathogenic relation to cotton seedlings. Afr J Microbiol Res 4: 386-395.
Nelson B, Helms T, Christianson T, Kural I, 1996. Characterization and pathogenicity Rhizoctonia from soybean. Plant Dis 80: 74-80. https://doi.org/10.1094/PD-80-0074
Nene YL, Reddy MV, 1987. Chickpea diseases and their control. In: The chickpea; Saxena, MC & Singh KB (eds.), CABWallingford, Oxon, UK, pp: 233-270.
Ogoshi A, 1987. Ecology and pathogenicity of anastomosis and intraspecific groups of Rhizoctonia solani Kühn. Ann Rev Phytopathol 25: 125-143. https://doi.org/10.1146/annurev.py.25.090187.001013
Pande S, Kishore GK, Rao JN, 2004. Evaluation of chickpea lines for resistance to dry root rot caused by Rhizoctonia bataticola. Int Chickpea Pigeonpea Newslet 11: 37-38.
Parmeter JR, Whitney HS, 1970. Taxonomy and nomenclature of the perfect state. In: Rhizoctonia solani biology and pathology; Parmeter JR Jr (ed.), Univ of California Press, Berkeley, USA, pp: 6-19.
Priyatmojo A, Yamauchi R, Kageyama K, Hyakumachi M, 2001. Grouping of binucleate Rhizoctonia anastomosis group d (ag-d) isolates into subgroups i and ii based on whole-cell fatty acid compositions. J Phytopathol 149: 421-426. https://doi.org/10.1046/j.1439-0434.2001.00652.x
Salazar O, Julian MC, Rubio V, 2000. Primer based on specific rDNA-ITS sequences for PCR detection of Rhizoctonia solani, R. solani AG 2 subgroups and ecological types, and binucleate Rhizoctonia. Mycol Res 104: 281-285. https://doi.org/10.1017/S0953756299001355
Sharma M, Mangla UN, Krishnamurthy M, Vedez V, Pande S, 2010. Drought and dry root rot of chickpea. 5th Int Food Legumes Res Conf (IFLRCV) & Eur Conf on Grain Legumes (AEP VII), Antalya, Turkey.
Sharon M, Freeman S, Kuninaga S, Sneh B, 2007. Genetic diversity, anastomosis groups and virulence of Rhizoctonia spp. from strawberry. Eur J Plant Pathol 117: 247-265. https://doi.org/10.1007/s10658-006-9091-7
Sharon M, Kuninaga S, Hyakumachi M, Naito S, Sneh B, 2008. Classification of Rhizoctonia spp. using rDNA-ITS sequence analysis supports the genetic basis of the classical anastomosis grouping. Mycoscience 49: 93-114. https://doi.org/10.1007/S10267-007-0394-0
Sneh B, Burpee L, Ogoshi A, 1991. Identification of Rhizoctonia species. Am Phytopath Soc Press, St. Paul, MN, USA.
Sneh B, Jabaji-Hare S, Neate S, Dijst G, 1996. Rhizoctonia species: Taxonomy, molecular biology, ecology, pathology and diseases control. Springer Sci & Business Media. https://doi.org/10.1007/978-94-017-2901-7
Townsend GK, Heuberger JW, 1943. Methods for estimating losses caused by diseases in fungicide experiments. Plant Dis Reptr 27: 340-343.
Tuncer G, Erdiller G, 1990. The identification of Rhizoctonia solani Kuhn anastomosis groups isolated from potato and some other crops in Central Anatolia. J Turk Phytopathol 19 (2): 89-93.
Tuncer S, Eken C, 2013. Anastomosis grouping of Rhizoctonia solani and binucleate Rhizoctonia spp. isolated from pepper in Erzincan, Turkey. Plant Prot Sci, Prague, 49: 130-134. https://doi.org/10.17221/77/2012-PPS
Ünal F, Bayraktar H, Yıldırım AF, Akan K, Dolar FS, 2015. Kayseri, Kırşehir, Nevşehir ve Aksaray illeri buğday ekim alanlarındaki Rhizoctonia tür ve anastomosis gruplarının belirlenmesi. Bitki Koruma Bülteni 55 (2): 107-122.
Ünal F, Kara ME, 2017. Molecular characterization of Rhizoctonia species and anastomosis groups in barley production areas in Ankara province. J Turk Phytopath 46 (2): 61-67.
White TJ, Bruns T, Lee S, Taylor JW, 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR protocols: A guide to methods and applications; Innis MA et al. (eds). Acad Press, Inc., NY, pp: 315-322. https://doi.org/10.1016/B978-0-12-372180-8.50042-1
Yang G, Li C, 2012. General description of Rhizoctonia species complex. In: Plant Pathology; Cumagun CJR (ed). InTech, Croatia, pp: 41-52. https://doi.org/10.5772/39026
Yıldız A, Döken MT, 2002. Anastomosis group determination of Rhizoctonia solani Kuhn (Telomorph: Thanatephorus cucumeris) isolates from tomatoes grown in Aydın, Turkey and their disease reaction on various tomato cultivars. J Phytopathol 150 (10): 526-528. https://doi.org/10.1046/j.1439-0434.2002.00785.x
Youssef NOB, Rhouma A, Krid S, Kharrat M, 2010. First report of Rhizoctonia solani AG 2-3 on chickpea in Tunisia. Phytopathol Mediterr 49: 253-257.
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