The effect of crop sequences on soil microbial, chemical and physical indicators and its relationship with soybean sudden death syndrome (complex of Fusarium species)
Abstract
The effect of crop sequences on soil quality indicators and its relationship with sudden death syndrome (SDS, a complex of Fusarium species) was evaluated by physical, chemical, biochemical and molecular techniques. Regarding physical aspects, soybean/maize and maize monoculture exhibited the highest stable aggregate level, with values 41% and 43% higher than in soybean monoculture, respectively, and 133% higher than in bean monoculture. Bulk density (BD) was higher in soybean monoculture, being 4% higher than in bean monoculture. The chemical parameters organic matter, total N, P, K, Mg, Ca, and water holding capacity also indicated that soybean/maize and maize monoculture improved soil quality. Fungal and bacterial community fingerprints generated using Terminal Restriction Fragment Length Polymorphism analysis of intergenic transcribed spacer regions of rRNA genes and 16S rRNA genes, respectively, indicated a clear separation between the rotations. Fatty acid profiles evaluated by FAME showed that bean monoculture had higher biomass of Gram (+) bacteria and stress indicators than maize monoculture, while the soybean/maize system showed a significant increase in total microbial biomass (total FAMEs content) in comparison with soybean and bean monoculture. The incidence of SDS (Fusarium crassistipitatum) was markedly higher (15%) under soybean monoculture than when soybean was grown in rotation with maize. In the present work, soil microbial properties were improved under soybean/maize relative to continuous soybean. The improvement of soil health was one of the main causes for the reduction of disease pressure and crop yield improvement due to the benefits that crop rotation produces for soil quality.Downloads
References
Adam G, Duncan H, 2001. Development of a sensitive and rapid method for measurement of total microbial activity using fluorescein diacetate (FDA) in a range of soils. Soil Biol Biochem 33: 943-951. http://dx.doi.org/10.1016/S0038-0717(00)00244-3
Alef K, 1995. Soil respiration. In: Methods in applied soil microbiology and biochemistry (Alef K, Nanninpieri P, eds.). Academic Press, London, UK. pp: 214-219.
Allen SE, 1989. Chemical analysis of ecological materials. Blackwell Sci. Publ., Melbourne. 565 pp.
Aoki T, O'Donnell K, Scandiani MM, 2005. Sudden death syndrome of soybean in South America is caused by four species of Fusarium: Fusarium brasiliense sp. nov., F. cuneirostrum sp. nov., F. tucumaniae, and F. virguliforme. Mycoscience 46: 162-183. http://dx.doi.org/10.1007/S10267-005-0235-Y
Arshad MA, Soon YK, Ripmeester JA, 2011. Quality of soil organic matter and C storage as influenced by cropping systems in northwestern Alberta, Canada. Nutr Cycl Agroecosys 89: 71-79. http://dx.doi.org/10.1007/s10705-010-9377-1
Bennett AJ, Bending GD, Chandler D, Hilton S, Mills P, 2012. Meeting the demand for crop production: The challenge of yield decline in crops grown in short rotations. Biol Rev 87: 52-71. http://dx.doi.org/10.1111/j.1469-185X.2011.00184.x
Black CA, 1965. Methods of soil analysis. Part 2. Chemical and microbiological properties. Am Soc Agron Inc. Publisher, Madison, WI, USA. 770 pp.
Blake GR, Hartge KH, 1986. Bulk density. In: Methods of soil analysis agronomy (Klute A, ed.). Monograph No. 9, 2nd ed., ASA/SSSA, Madison, WI, USA. pp: 363-375.
Bray RH, Kurtz LT, 1945. Determination of total organic and available forms of phosphorus in soils. Soil Sci 59: 39-45. http://dx.doi.org/10.1097/00010694-194501000-00006
Bremner JM, 1996. Nitrogen-total. In: Methods of soil analysis (Sparks DL, ed.). Soil Sci Soc Am J Book series Nº 5, Madison, WI, USA. pp: 1085-1128.
Bronick CJ, Lal R, 2005. Soil structure and management: a review. Geoderma 124: 3-22. http://dx.doi.org/10.1016/j.geoderma.2004.03.005
Cavigelli MA, Robertson GP, Klug MJ, 1995. Fatty acid methyl ester (FAME) profiles as measures of soil microbial community structure. Plant Soil 170: 99-113. http://dx.doi.org/10.1007/BF02183058
Chong SK, Hildebranda KK, Luob Y, Myersa O, Indorantec SJ, Kazakeviciusd A, Russina J, 2005. Mapping soybean sudden death syndrome as related to yield and soil/site properties. Soil Till Res 84: 101-107. http://dx.doi.org/10.1016/j.still.2004.09.001
Clement BG, Kehl LE, DeBord KL, Kits CL, 1998. Terminal restriction fragment patterns (TRFLPs), a rapid, PCR-based method for the comparison of complex bacterial communities. J Microbiol Meth 31: 135-142. http://dx.doi.org/10.1016/S0167-7012(97)00105-X
Corvalán ER, Franzoni A, Huidobro D, Arzeno JL, 2000. Método de microtamices para la determinación de la estabilidad de agregados del suelo, 1-2 mm. Actas del XVII Congreso Argentino de la Ciencia del Suelo. Mar del Plata. Comisión I, Panel 25.
Dale VH, Peacock AD, Garten CT, Sobek E, Wolfe AK, 2008. Selecting indicators of soil, microbial, and plant conditions to understand ecological changes in Georgia pine forests. Ecol Indic 8: 818-827. http://dx.doi.org/10.1016/j.ecolind.2007.08.001
Dijkstra FA, Morgan JA, Blumenthal DM, Follett RF, 2010. Water limitation and plant inter-specific competition reduce rhizosphere-induced C decomposition and plant N uptake. Soil Biol Biochem 42: 1073-1082. http://dx.doi.org/10.1016/j.soilbio.2010.02.026
Donnison LM, Griffith GS, Hedger J, Hobbs PJ, Bardgett RD, 2000. Management influences on soil microbial communities and their function in botanically diverse haymeadows of northern England and Wales. Soil Biol Biochem 32: 253-263. http://dx.doi.org/10.1016/S0038-0717(99)00159-5
Drinkwater LE, Wagoner P, Sarrantonio M, 1998. Legume-based cropping systems have reduced carbon and nitrogen losses. Nature 396: 262-264. http://dx.doi.org/10.1038/24376
Fuentes M, Govaerts B, Hidalgo C, Etchevers J, González-Martín I, Hernández-Hierro JM, Sayre KD, Dendooven L, 2010. Organic carbon and stable 13C isotope in conservation agriculture and conventional systems. Soil Biol Biochem 42: 551-557. http://dx.doi.org/10.1016/j.soilbio.2009.11.020
García C, Hernández MT, Costa F, 1997. Potential use of dehydrogenase activity as an index of microbial activity in degraded soils. Comm in Soil Sci Plant Anal 28: 123-134. http://dx.doi.org/10.1080/00103629709369777
Gardes M, Bruns TD, 1993. ITS primers with enhanced specificity for basidiomycetes: application to the identification of mycorrhiza and rusts. Mol Ecol 2: 118-133. http://dx.doi.org/10.1111/j.1365-294X.1993.tb00005.x
Hauben L, Vauterin L, Swings J, Moore ERB, 1997. Comparison of 16S ribosomal DNA sequences of all Xanthomonas species. Int J Syst Bact 47: 328-335. http://dx.doi.org/10.1099/00207713-47-2-328
Jenkinson D, Powlson D, 1976. The effects of biocidal treatments on metabolism in soil –V: methods for measuring soil biomass. Soil Biol Biochem 8: 209-213. http://dx.doi.org/10.1016/0038-0717(76)90005-5
Kaiser K, Guggenberger G, Zech W, 1998. Formation of refractory soil organic matter by sorption. Mitteilungen der Deutschen Bodenkundlichen Gesellschaft 87: 211-224.
Karlen DL, Hurley EG, Andrews SS, Cambardella CA, Meek DW, Duffy MD, Mallarino AP, 2006. Crop rotation effects on soil quality at three northern corn/soybean belt locations. Agron J 98: 484-495. http://dx.doi.org/10.2134/agronj2005.0098
Karr JR, 1991. Biological integrity: A long neglected aspect of water resource management. Ecol Appl 1: 66-84. http://dx.doi.org/10.2307/1941848
Kolander TM, Bienapfl JC, Kurle JE, Malvick DK, 2012. Symptomatic and asymptomatic host range of Fusarium virguliforme, the causal agent of soybean sudden death syndrome. Plant Dis 96 (8): 1148-1153. http://dx.doi.org/10.1094/PDIS-08-11-0685-RE
Kourtev PS, Ehrenfeld JG, Haggblom M, 2003. Experimental analysis of the effect of exotic and native plant species on the structure and function of soil microbial communities. Soil Biol Biochem 35: 895-905. http://dx.doi.org/10.1016/S0038-0717(03)00120-2
Kowalchuk GA, Buma DS, de Boer W, Klinkhamer PGL, van Veen JA, 2002. Effects of above-ground plant species composition and diversity on the soil-borne microorganisms. Antonie van Leeuwenhoek 81: 509-520. http://dx.doi.org/10.1023/A:1020565523615
Larkin RP, Griffin TS, Honeycutt CW, 2010. Rotation and cover crop effects on soilborne potato diseases, tuber yield, and soil microbial communities. Plant Dis 94: 1491-1502. http://dx.doi.org/10.1094/PDIS-03-10-0172
Leckie S, 2005. Methods of microbial community profiling and their application to forest soils. Forest Ecol Manag 220: 88-106. http://dx.doi.org/10.1016/j.foreco.2005.08.007
Macdonald LM, Paterson E, Dawson L, McDonald AJS, 2004. Short-term effects of defoliation on the soil microbial community associated with two contrasting perenne cultivars. Soil Biol Biochem 36: 489-498. http://dx.doi.org/10.1016/j.soilbio.2003.11.001
Marchesi JR, Sato T, Weghtman AJ, Martin TA, Fry JC, Hion SJ, 1998. Design and evaluation of useful bacterium specific DNA primers that amplify genes coding for bacterial 16S rRNA. Appl Environ Microbiol 64: 795-799.
Oades JM, 1984. Soil organic matter and structural stability: mechanisms and complications for measurements for management. Plant Soil 76: 319-337. http://dx.doi.org/10.1007/BF02205590
Rupe JC, Robbins RT, Gbur EE, 1997. Effect of crop rotation on soil population densities of Fusarium solani and Heterodera glycines and on the development of sudden death syndrome of soybean. Crop Prot 16: 575-580. http://dx.doi.org/10.1016/S0261-2194(97)00031-8
Sainju UM, Lenssen AW, Ton That TC, Jabro JD, Lartey RT, Evans RG, Allen BL, 2011. Dryland residue and soil organic matter as influenced by tillage, crop rotation, and cultural practice. Plant Soil 338: 27-41. http://dx.doi.org/10.1007/s11104-010-0403-5
Sanogo S, Yang XB, 2001. Relation of sand content, pH, and potassium and phosphorus nutrition to the development of sudden death syndrome in soybean. Can J Plant Pathol 23: 174-180. http://dx.doi.org/10.1080/07060660109506927
Singh BK, Nazaries L, Munro S, Anderson IC, Campbell CD, 2006. Multiplex-terminal restriction fragment length polymorphism for rapid and simultaneous analysis of different components of the soil microbial communities. Appl Environ Microbiol 72: 7278-7285. http://dx.doi.org/10.1128/AEM.00510-06
Smalla K, Wieland G, Buchner A, Zock A, Parzy J, Kaiser S, Roskot N, Heuer H, Berg G, 2001. Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: plant-dependent enrichment and seasonal shifts revealed. Appl Environ Microbiol 67: 4742-4751. http://dx.doi.org/10.1128/AEM.67.10.4742-4751.2001
Soil Survey Staff, 1999. Soil taxonomy: a basic system of soil classification for making and interpreting soil surveys, 2nd edition. USDA Soil Conserv Serv, Washington DC, USA. 869 pp.
Stephan A, Meyer AH, Schmid B, 2000. Plant diversity affects culturable soil bacteria in experimental grassland communities. J Ecol 88: 988-998. http://dx.doi.org/10.1046/j.1365-2745.2000.00510.x
Sullivan P, 2001. Sustainable management of soil-borne plant diseases. ATTRA, USDA's Rural Business Cooperative Service.
Vanotti MB, Bundy LG, 1995. Soybean effects on soil nitrogen availability in crop rotations. Agron J 87: 676-680. http://dx.doi.org/10.2134/agronj1995.00021962008700040012x
Vargas-Gil J, 1990. Atlas de suelos de la República Argentina, INTA, Córdoba, Argentina.
Vargas-Gil S, Pedelini R, Oddino C, Zuza M, Marinelli A, March GJ, 2008. The role of potential biocontrol agents in the management of peanut root rot in Argentina. J Plant Pathol 90: 35-41.
Vargas-Gil S, Meriles J, Conforto C, Figoni G, Basanta M, Lovera E, March GJ, 2009a. Field assessment of soil biological and chemical quality in response to crop management practices. World J Microb Biot 25: 439-448. http://dx.doi.org/10.1007/s11274-008-9908-y
Vargas-Gil S, Pastor S, March GJ, 2009b. Quantitative isolation of biocontrol agents Trichoderma spp., Gliocladium spp. and actinomycetes from soil with culture media. Microb Res 164: 196-205. http://dx.doi.org/10.1016/j.micres.2006.11.022
Wang G, Xu Y, Jin J, Liu J, Zhang Q, Liu X, 2009. Effect of soil type and soybean genotype on fungal community in soybean rhizosphere during reproductive rowth stages. Plant Soil 317: 135-144. http://dx.doi.org/10.1007/s11104-008-9794-y
White TJ, Bruns TD, Lee S, Taylor J, 1990. Analysis of phylogenetic relationship by amplification and direct sequencing of ribosomal RNA genes. In: PCR protocol: a guide to method and applications (Innis MA, Gelfond DH, Sainsky JJ, White TJ, eds.). Academic Press, NY, pp: 145-197.
Wright SF, Upadhyaya A, 1996. Extraction of an abundant and unusual protein from soil and comparison with hyphal protein of arbuscular mycorrhizal fungi. Soil Sci 161: 575-586. http://dx.doi.org/10.1097/00010694-199609000-00003
Xing L, Westphal A, 2009. Effects of crop rotation of soybean with corn on severity of sudden death syndrome and population densities of Heterodera glycines in naturally infested soil. Field Crop Res 209: 107-117. http://dx.doi.org/10.1016/j.fcr.2009.02.008
Yusuf AA, Abaidoo RC, Iwuafor ENO, Olufajo OO, Sanginga N, 2009. Rotation effects of grain legumes and fallow on maize yield, microbial biomass and chemical properties of an Alfisol in the Nigerian savanna. Agr Ecosyst Environ 129: 325-331. http://dx.doi.org/10.1016/j.agee.2008.10.007
Zuo Y, Zhang F, 2009. Iron and zinc biofortification strategies in dicot plants by intercropping with gramineous species. A review. Agron Sustain Dev 29: 63-71. http://dx.doi.org/10.1051/agro:2008055
© CSIC. Manuscripts published in both the print and online versions of this journal are the property of the Consejo Superior de Investigaciones Científicas, and quoting this source is a requirement for any partial or full reproduction.
All contents of this electronic edition, except where otherwise noted, are distributed under a Creative Commons Attribution 4.0 International (CC BY 4.0) licence. You may read the basic information and the legal text of the licence. The indication of the CC BY 4.0 licence must be expressly stated in this way when necessary.
Self-archiving in repositories, personal webpages or similar, of any version other than the final version of the work produced by the publisher, is not allowed.